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Documentation
Installation Guide
Tutorial 1: Data Preparation
Tutorial 2: Spatial P22 Mouse Brain (ATAC + RNA)
Tutorial 3: Spatial Human Tonsil (RNA + Protein Epitopes)
Tutorial 4: Single-cell Human PBMC (ATAC + RNA + Protein Epitopes)
Tutorial 5: Selecting the number of topics
API
mtopic.read.h5mu
mtopic.pp.permute
mtopic.pp.tfidf
mtopic.pp.clr
mtopic.pp.scale_counts
mtopic.pp.filter_var_knee
mtopic.pp.filter_var_list
mtopic.pp.feature_associations_data
mtopic.tl.MTM
mtopic.tl.MTM_GPU
mtopic.tl.sMTM
mtopic.tl.sMTM_GPU
mtopic.tl.export_params
mtopic.tl.zscores
mtopic.tl.umap
mtopic.tl.feature_associations
mtopic.tl.select_n_topics
mtopic.pl.select_n_topics
mtopic.pl.filter_var_knee
mtopic.pl.filter_topics
mtopic.pl.topics
mtopic.pl.scatter_pie
mtopic.pl.dominant_topics
mtopic.pl.signatures
mtopic.pl.zscores
mtopic.pl.corr_heatmap
mtopic.pl.feature_activity
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